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Helpers

  • hopsy.compute_chebyshev_center
  • hopsy.generate_unit_hypercube
  • hopsy.generate_unit_simplex
  • hopsy.is_polytope_empty
  • hopsy.run_multiphase_sampling
  • hopsy.simplify
  • hopsy.BirkhoffPolytope
    • hopsy.BirkhoffPolytope.convert_to_full_space
  • hopsy.LP
    • hopsy.LP.reset

Models

  • hopsy.Model
    • hopsy.Model.compute_expected_fisher_information
    • hopsy.Model.compute_log_likelihood_gradient
    • hopsy.Model.compute_negative_log_likelihood
    • hopsy.Model.log_curvature
    • hopsy.Model.log_density
    • hopsy.Model.log_gradient
  • hopsy.Gaussian
    • hopsy.Gaussian.compute_expected_fisher_information
    • hopsy.Gaussian.compute_log_likelihood_gradient
    • hopsy.Gaussian.compute_negative_log_likelihood
    • hopsy.Gaussian.log_curvature
    • hopsy.Gaussian.log_density
    • hopsy.Gaussian.log_gradient
  • hopsy.Mixture
    • hopsy.Mixture.compute_expected_fisher_information
    • hopsy.Mixture.compute_log_likelihood_gradient
    • hopsy.Mixture.compute_negative_log_likelihood
    • hopsy.Mixture.log_curvature
    • hopsy.Mixture.log_density
    • hopsy.Mixture.log_gradient
  • hopsy.Rosenbrock
    • hopsy.Rosenbrock.compute_expected_fisher_information
    • hopsy.Rosenbrock.compute_log_likelihood_gradient
    • hopsy.Rosenbrock.compute_negative_log_likelihood
    • hopsy.Rosenbrock.log_curvature
    • hopsy.Rosenbrock.log_density
    • hopsy.Rosenbrock.log_gradient

Problem

  • hopsy.Problem
    • hopsy.Problem.slacks
  • hopsy.round
  • hopsy.add_box_constraints
  • hopsy.add_equality_constraints
  • hopsy.back_transform
  • hopsy.transform

Proposals

  • hopsy.Proposal
  • hopsy.AdaptiveMetropolisProposal
    • hopsy.AdaptiveMetropolisProposal.accept_proposal
    • hopsy.AdaptiveMetropolisProposal.deepcopy
    • hopsy.AdaptiveMetropolisProposal.propose
  • hopsy.BallWalkProposal
    • hopsy.BallWalkProposal.accept_proposal
    • hopsy.BallWalkProposal.deepcopy
    • hopsy.BallWalkProposal.propose
  • hopsy.BilliardWalkProposal
    • hopsy.BilliardWalkProposal.accept_proposal
    • hopsy.BilliardWalkProposal.deepcopy
    • hopsy.BilliardWalkProposal.propose
  • hopsy.CSmMALAProposal
    • hopsy.CSmMALAProposal.accept_proposal
    • hopsy.CSmMALAProposal.deepcopy
    • hopsy.CSmMALAProposal.propose
  • hopsy.DikinWalkProposal
    • hopsy.DikinWalkProposal.accept_proposal
    • hopsy.DikinWalkProposal.deepcopy
    • hopsy.DikinWalkProposal.propose
  • hopsy.GaussianCoordinateHitAndRunProposal
    • hopsy.GaussianCoordinateHitAndRunProposal.accept_proposal
    • hopsy.GaussianCoordinateHitAndRunProposal.deepcopy
    • hopsy.GaussianCoordinateHitAndRunProposal.propose
  • hopsy.GaussianHitAndRunProposal
    • hopsy.GaussianHitAndRunProposal.accept_proposal
    • hopsy.GaussianHitAndRunProposal.deepcopy
    • hopsy.GaussianHitAndRunProposal.propose
  • hopsy.GaussianProposal
    • hopsy.GaussianProposal.accept_proposal
    • hopsy.GaussianProposal.deepcopy
    • hopsy.GaussianProposal.propose
  • hopsy.ReversibleJumpProposal
    • hopsy.ReversibleJumpProposal.accept_proposal
    • hopsy.ReversibleJumpProposal.deepcopy
    • hopsy.ReversibleJumpProposal.propose
  • hopsy.UniformCoordinateHitAndRunProposal
    • hopsy.UniformCoordinateHitAndRunProposal.accept_proposal
    • hopsy.UniformCoordinateHitAndRunProposal.deepcopy
    • hopsy.UniformCoordinateHitAndRunProposal.propose
  • hopsy.UniformHitAndRunProposal
    • hopsy.UniformHitAndRunProposal.accept_proposal
    • hopsy.UniformHitAndRunProposal.deepcopy
    • hopsy.UniformHitAndRunProposal.propose
  • hopsy.TruncatedGaussianProposal
    • hopsy.TruncatedGaussianProposal.accept_proposal
    • hopsy.TruncatedGaussianProposal.deepcopy
    • hopsy.TruncatedGaussianProposal.propose

Random

  • hopsy.RandomNumberGenerator
    • hopsy.RandomNumberGenerator.__call__
  • hopsy.Uniform
    • hopsy.Uniform.__call__
  • hopsy.Normal
    • hopsy.Normal.__call__

Markov Chain

  • hopsy.MarkovChain
  • hopsy.setup
  • hopsy.sample

Diagnostics

  • hopsy.ess
  • hopsy.mcse
  • hopsy.rhat
  • hopsy.tune
  • User Guide
  • Markov Chain Monte Carlo Sampling
  • hopsy.GaussianCoordinateHitAndRunProposal
  • hopsy.GaussianCoordinateHitAndRunProposal.deepcopy

hopsy.GaussianCoordinateHitAndRunProposal.deepcopy#

GaussianCoordinateHitAndRunProposal.deepcopy()#

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