- s -

• sample() : hops::GaussianProcess< MatrixType, VectorType, Kernel > , hops::RunBase< Model, Proposal >
• SbmlReader() : hops::SbmlReader
• seed() : pcg_detail::engine< xtype, itype, output_mixin, output_previous, stream_mixin, multiplier_mixin > , pcg_detail::extended< table_pow2, advance_pow2, baseclass, extvalclass, kdd >
• seed_seq_from() : pcg_extras::seed_seq_from< RngType >
• select() : HighFive::SliceTraits< Derivate >
• set() : H5Easy::DumpOptions , pcg_detail::extended< table_pow2, advance_pow2, baseclass, extvalclass, kdd >
• set_stream() : pcg_detail::no_stream< itype > , pcg_detail::oneseq_stream< itype > , pcg_detail::specific_stream< itype >
• setA() : hops::Problem< Model >
• setAcceptanceRates() : hops::ChainData
• setAttribute() : hops::MarkovChainAdapter< MarkovChainImpl > , hops::MarkovChainInterface< StateType >
• setB() : hops::Problem< Model >
• setChunkSize() : H5Easy::DumpOptions
• setColdness() : hops::Coldness< ModelType >
• setConstraintMatrix() : hops::SbmlModel< MatrixType, VectorType >
• setConstraintVector() : hops::SbmlModel< MatrixType, VectorType >
• setConvergenceThreshold() : hops::RunBase< Model, Proposal >
• setDimension() : hops::Data
• setErrorMsg() : HighFive::Exception
• setFisherWeight() : hops::CSmMALAProposal< ModelType, InternalMatrixType > , hops::RunBase< Model, Proposal >
• setKernelSigma() : hops::GaussianProcess< MatrixType, VectorType, Kernel >
• setLowerBounds() : hops::SbmlModel< MatrixType, VectorType >
• setMarkovChainType() : hops::RunBase< Model, Proposal >
• setMaxRepetitions() : hops::RunBase< Model, Proposal >
• setModel() : hops::ModelWrapper
• setNegativeLogLikelihood() : hops::ChainData
• setNumberOfChains() : hops::RunBase< Model, Proposal >
• setNumberOfSamples() : hops::RunBase< Model, Proposal >
• setParameterNames() : hops::SbmlModel< MatrixType, VectorType >
• setPhi() : hops::TruncatedNormalDistribution< RealType >::param_type
• setProblem() : hops::RunBase< Model, Proposal >
• setRandomSeed() : hops::RunBase< Model, Proposal >
• setSamplingUntilConvergence() : hops::RunBase< Model, Proposal >
• setStartingPoint() : hops::Problem< Model >
• setStartingPoints() : hops::RunBase< Model, Proposal >
• setState() : hops::AdaptiveMetropolisProposal< MatrixType, VectorType > , hops::BallWalkProposal< MatrixType, VectorType > , hops::CoordinateHitAndRunProposal< MatrixType, VectorType, ChordStepDistribution > , hops::CSmMALAProposal< ModelType, InternalMatrixType > , hops::DikinProposal< MatrixType, VectorType > , hops::GaussianProposal< MatrixType, VectorType > , hops::HitAndRunProposal< MatrixType, VectorType, ChordStepDistribution, Precise > , hops::MarkovChainAdapter< MarkovChainImpl > , hops::MarkovChainInterface< StateType > , hops::NoProposal , hops::StateTransformation< MarkovChainImpl, Transformation >
• setStates() : hops::ChainData
• setStepSize() : hops::AdaptiveMetropolisProposal< MatrixType, VectorType > , hops::BallWalkProposal< MatrixType, VectorType > , hops::CoordinateHitAndRunProposal< MatrixType, VectorType, ChordStepDistribution > , hops::CSmMALAProposal< ModelType, InternalMatrixType > , hops::DikinProposal< MatrixType, VectorType > , hops::GaussianProposal< MatrixType, VectorType > , hops::GaussianStepDistribution< RealType > , hops::HitAndRunProposal< MatrixType, VectorType, ChordStepDistribution, Precise > , hops::RunBase< Model, Proposal >
• setStoichiometry() : hops::SbmlModel< MatrixType, VectorType >
• setThinning() : hops::RunBase< Model, Proposal >
• setTimestamps() : hops::ChainData
• setTotalNumberOfTuningSamples() : hops::Data
• setTotalTuningTimeTaken() : hops::Data
• setTunedObjectiveValue() : hops::Data
• setTunedStepSize() : hops::Data
• setTuningData() : hops::Data
• setTuningMethod() : hops::Data
• setTuningPosterior() : hops::Data
• setUnroundingShift() : hops::Problem< Model >
• setUnroundingTransformation() : hops::Problem< Model >
• setUpperBounds() : hops::SbmlModel< MatrixType, VectorType >
• setUseRounding() : hops::RunBase< Model, Proposal >
• Shuffle() : HighFive::Shuffle
• SilenceHDF5() : HighFive::SilenceHDF5
• SimpleExpectedSquaredJumpDistanceTuner() : hops::SimpleExpectedSquaredJumpDistanceTuner
• size() : HighFive::FixedLenStringArray< N > , pcg_extras::seed_seq_from< RngType >
• solve() : hops::LinearProgram , hops::LinearProgramClpImpl , hops::LinearProgramGurobiImpl
• specific_stream() : pcg_detail::specific_stream< itype >
• SquaredExponentialKernel() : hops::SquaredExponentialKernel< MatrixType, VectorType >
• stackWalk() : HighFive::HDF5ErrMapper
• StateRecorder() : hops::StateRecorder< MarkovChainImpl >
• StateTransformation() : hops::StateTransformation< MarkovChainImpl, Transformation >
• storeRecord() : hops::AcceptanceRateRecorder< MarkovChainImpl > , hops::MessageRecorder< MarkovChainImpl > , hops::NegativeLogLikelihoodRecorder< MarkovChainImpl > , hops::StateRecorder< MarkovChainImpl > , hops::TimestampRecorder< MarkovChainImpl >
• stream() : pcg_detail::oneseq_stream< itype > , pcg_detail::specific_stream< itype >
• streams_pow2() : pcg_detail::no_stream< itype > , pcg_detail::oneseq_stream< itype > , pcg_detail::specific_stream< itype >
• string() : HighFive::DataType