hops
hops.hpp
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7 
10 #include "FileReader/SbmlModel.hpp"
12 
13 #include "FileWriter/CsvWriter.hpp"
19 
24 
29 
32 
39 
48 
53 
69 
71 #include "Model/Mixture.hpp"
72 #include "Model/Model.hpp"
74 #include "Model/Rosenbrock.hpp"
75 
79 
81 
83 
84 #include "Utility/ChainData.hpp"
85 #include "Utility/Data.hpp"
86 #include "Utility/Exceptions.hpp"
87 #include "Utility/MatrixType.hpp"
88 #include "Utility/Problem.hpp"
89 #include "Utility/Run.hpp"
90 #include "Utility/VectorType.hpp"
91 
92 #ifdef HOPS_HEADER_ONLY
93 
94 #include "FileReader/CsvReader.cpp"
96 
97 #include "FileWriter/CsvWriter.cpp"
100 
105 
110 
112 
113 #ifdef HOPS_HDF5_SUPPORT
114 #include "FileReader/Hdf5Reader.cpp"
115 #include "FileWriter/Hdf5Writer.cpp"
116 #endif //HOPS_HDF5_SUPPORT
117 
118 #endif //HOPS_HEADER_ONLY
ParallelTempering.hpp
IsAcceptProposalAvailable.hpp
GurobiEnvironmentSingleton.cpp
MarkovChainAdapter.hpp
IsResetAcceptanceRateAvailable.hpp
Exceptions.hpp
IsSetFisherWeightAvailable.hpp
TimestampRecorder.hpp
MaximumVolumeEllipsoid.cpp
IsSetColdnessAvailable.hpp
MaximumVolumeEllipsoid.hpp
RandomNumberGenerator.hpp
IsConstantChain.hpp
AcceptanceRateTuner.hpp
AcceptanceRateTuner.cpp
Hdf5Reader.cpp
Hdf5Reader.hpp
IsGetExchangeAttemptProbabilityAvailable.hpp
IsAddMessageAvailabe.hpp
MetropolisHastingsFilter.hpp
LinearProgramClpImpl.cpp
IsClearRecordsAvailable.hpp
NormalizePolytope.hpp
MarkovChainType.hpp
MessageRecorder.hpp
IsStoreRecordAvailable.hpp
Transformation.hpp
LinearProgramGurobiImpl.cpp
SbmlModel.hpp
SimpleExpectedSquaredJumpDistanceTuner.hpp
SimpleExpectedSquaredJumpDistanceTuner.cpp
DikinProposal.hpp
FileWriterType.hpp
Problem.hpp
TruncatedNormalDistribution.hpp
Covariance.hpp
Coldness.hpp
FileWriterFactory.cpp
MultivariateGaussian.hpp
FileWriterFactory.hpp
Run.hpp
CoordinateHitAndRunProposal.hpp
DegenerateMultivariateGaussian.hpp
ExpectedSquaredJumpDistance.hpp
PotentialScaleReductionFactor.hpp
BinarySearchAcceptanceRateTuner.hpp
BinarySearchAcceptanceRateTuner.cpp
Model.hpp
HitAndRunProposal.hpp
StateTransformation.hpp
Data.hpp
Mixture.hpp
IsGetColdnessAvailable.hpp
CsvReader.cpp
CsvReader.hpp
ChainData.hpp
MarkovChain.hpp
ChordStepDistributions.hpp
MarkovChainFactory.hpp
IsGetStepSizeAvailable.hpp
VectorType.hpp
MatrixType.hpp
SbmlReader.hpp
CsvWriterImpl.cpp
SbmlReader.cpp
CsvWriterImpl.hpp
MarkovChainAttribute.hpp
IsSetExchangeAttemptProbabilityAvailable.hpp
LinearProgram.hpp
LinearProgram.cpp
AcceptanceRateRecorder.hpp
IsWriteRecordsToFileAvailable.hpp
ModelMixin.hpp
IsCalculateLogAcceptanceProbabilityAvailable.hpp
NoOpDrawAdapter.hpp
LinearProgramStatus.hpp
LinearProgramFactory.hpp
LinearProgramSolution.hpp
ExpectedSquaredJumpDistanceTuner.hpp
FileWriter.hpp
ExpectedSquaredJumpDistanceTuner.cpp
StateRecorder.hpp
DikinEllipsoidCalculator.hpp
CsvWriter.hpp
CsvWriter.cpp
IsSetStepSizeAvailable.hpp
SimplexFactory.hpp
EffectiveSampleSize.hpp
Rosenbrock.hpp
Autocorrelation.hpp
Hdf5Writer.hpp
Hdf5Writer.cpp